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Title

IntergenicDB: a database for intergenic sequences

 

Authors

Daniel Luis Notari1, 2 *, Aurione Molin1, Vanessa Davanzo1, Douglas Picolotto1, Helena Graziottin Ribeiro1 & Scheila de Avila e Silva2

 

Affiliation

1Centro de Computação e Tecnologia da Informação, Universidade de Caxias do Sul, Rua Francisco Getúlio Vargas, 1130 - CEP 95070-560 - Caxias do Sul, Rio Grande do Sul, Brasil; 2Instituto de Biotecnologia, Universidade de Caxias do Sul, Rua Francisco Getúlio Vargas, 1130 - CEP 95070-560 - Caxias do Sul, Rio Grande do Sul, Brasil

 

Email

dlnotari@gmail.com; *Corresponding author

 

Article Type

Database

Date

Received May 08, 2014; Revised May 23, 2014; Accepted May 24, 2014; Published June 30, 2014

 

Abstract

A whole genome contains not only coding regions, but also non-coding regions. These are located between the end of a given coding region and the beginning of the following coding region. For this reason, the information about gene regulation process underlies in intergenic regions. There is no easy way to obtain intergenic regions from current available databases. IntergenicDB was developed to integrate data of intergenic regions and their gene related information from NCBI databases. The main goal of INTERGENICDB is to offer friendly database for intergenic sequences of bacterial genomes.

 

Availability

http://intergenicdb.bioinfoucs.com/

 

Keywords

intergenic sequences, database, gene regulatory elements.

 

Citation

Notari et al. Bioinformation 10(6): 381-383 (2014)
 

Edited by

P Kangueane

 

ISSN

0973-2063

 

Publisher

Biomedical Informatics

 

License

This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.