Title

LSAT: Liliaceae Simple Sequences Analysis Tools, a web server

Authors

Manosh Kumar Biswas¹, Sathishkumar Natarajan¹, Dhiman Biswas², Ujjal Kumar Nath¹, Jong-In Park¹, Ill-Sup Nou¹*

Affiliation

¹Department of Horticulture, Sunchon National University, Suncheon, Jeonnam, 57922 South Korea;

²Department of Computer Science and Engineering, Maulana Abul Kalam Azad University of Technology, WB, India

Email

nis@sunchon.ac.kr

Article Type

Web Server

Date

Received April 5, 2018; Revised April 21, 2018; Accepted April 28, 2018; Published April 30, 2018

LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining and primer design. LSAT is user friendly with customizable search parameters producing visual output having download options. The current version of LSAT is backed by two data sets, namely, lily EST (Expressed Sequence Tag) from NCBI and lily nr (non redundant) with 4,099 and 216,768 unigenes, respectively. LSAT will be updated regularly upon availability of additional data (either EST and/or transcriptome) on Liliaceae.

Keywords

SSR-marker, Web-Tool, Lily

Citation

Biswas et al. Bioinformation 14(4): 181-182 (2018)

Edited by

P Kangueane

ISSN

0973-2063

Publisher

Biomedical Informatics

License

This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.