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Title

WGDB: Wood Gene Database with search interface

 

Authors

Neha Goyal & H.S. Ginwal*

 

Affiliation

Division of Genetics and Tree Propagation, Forest Research Institute, Dehradun, U.K., INDIA

 

Email

ginwalhs@icfre.org; *Corresponding author

 

Article Type

Database

 

Date

Received January 07, 2014; Accepted January 17, 2014; Published January 29, 2014

 

Abstract

Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits, fibre properties include the microfibril angle, density and stiffness in loblolly pine [1]. The user friendly and an open-access database has been developed named Wood Gene Database (WGDB) for describing the wood genes along the information of protein and published research articles. It contains 720 wood genes from species namely Pinus, Deodar, fast growing trees namely Poplar, Eucalyptus. WGDB designed to encompass the majority of publicly accessible genes codes for cellulose, hemicellulose and lignin in tree species which are responsive to wood formation and quality. It is an interactive platform for collecting, managing and searching the specific wood genes; it also enables the data mining relate to the genomic information specifically in Arabidopsis thaliana, Populus trichocarpa, Eucalyptus grandis, Pinus taeda, Pinus radiata, Cedrus deodara, Cedrus atlantica. For user convenience, this database is cross linked with public databases namely NCBI, EMBL & Dendrome with the search engine Google for making it more informative and provides bioinformatics tools named BLAST,COBALT.

 

Availability

The database is freely available on www.wgdb.in

 

Keywords

Wood, Cellulose, Pinus, Cedrus, Poplar, Eucalyptus.

 

Citation

Goyal & Ginwal, Bioinformation 10(1): 039-042 (2014)

 

Edited by

P Kangueane

 

ISSN

0973-2063

 

Publisher

Biomedical Informatics

 

License

This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.