FunSys: Software for functional analysis of prokaryotic transcriptome and proteome

BACK TO CONTENTS | PDF | PREVIOUS | NEXT

Title	FunSys: Software for functional analysis of prokaryotic transcriptome and proteome
Authors	Pablo de Sá¹, Anne Pinto², Rommel Thiago Jucá Ramos¹, Nilson Coimbra¹, Rafael Baraúna¹, Hivana Dall'Agnol¹, Adriana Carneiro¹, Alex Ranieri¹, Agenor Valadares¹, Vasco Azevedo², Maria Paula Schneider¹, Debmalya Barh³* & Artur Silva¹
Affiliation	¹Instituto de Cięncias Biológicas, Universidade Federal do Pará, Belém-PA, Brazil; ²Instituto de Cięncias Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte-MG, Brazil; ³Centre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur, WB-721172, India
Email	dr.barh@gmail.com; *Corresponding author
Article Type	Software
Date	Received May 14, 2012; Accepted May 20, 2012; Published June 16, 2012
Abstract	The vast amount of data produced by next-generation sequencing (NGS) has necessitated the development of computational tools to assist in understanding the myriad functions performed by the biological macromolecules involved in heredity. In this work, we developed the FunSys programme, a stand-alone tool with an user friendly interface that enables us to evaluate and correlate differential expression patterns from RNA sequencing and proteomics datasets. The FunSys generates charts and reports based on the results of the analysis of differential expression to aid the interpretation of the results.
Availability	https://sourceforge.net/projects/funsysufpa/. It requires Sun jdk 6 or higher and MySQL server 5.1 or higher.
Keywords	Next-generation sequencing, Gene expression, Bioinformatics, Software
Citation	*de Sá et al.* Bioinformation 8(11): 529-531 (2012)
Edited by	P Kangueane
ISSN	0973-2063
Publisher	Biomedical Informatics
License	This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.